Package: cytominer 0.2.2.9000

Shantanu Singh

cytominer: Methods for Image-Based Cell Profiling

`cytominer` is a suite of common functions used to process high-dimensional readouts from image-based cell profiling experiments.

Authors:Tim Becker [aut], Allen Goodman [aut], Claire McQuin [aut], Mohammad Rohban [aut], Shantanu Singh [aut, cre]

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cytominer.pdf |cytominer.html
cytominer/json (API)
NEWS

# Install 'cytominer' in R:
install.packages('cytominer', repos = c('https://cytomining.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/cytomining/cytominer/issues

On CRAN:

microscopyprofiling

6.87 score 48 stars 44 scripts 155 downloads 22 exports 80 dependencies

Last updated 1 years agofrom:d911eb5bc1. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 14 2024
R-4.5-winNOTEOct 14 2024
R-4.5-linuxNOTEOct 14 2024
R-4.4-winNOTEOct 14 2024
R-4.4-macNOTEOct 14 2024
R-4.3-winNOTEOct 14 2024
R-4.3-macNOTEOct 14 2024

Exports:aggregatecorrelation_thresholdcount_na_rowscovariancedrop_na_columnsdrop_na_rowsextract_subpopulationsfind_significant_pcsgeneralized_loggenerate_component_matrixhuskmark_outlier_rowsnormalizereplicate_correlationsparse_random_projectionspherizestratifysvd_entropytransformvariable_importancevariable_selectvariance_threshold

Dependencies:caretclasscliclockcodetoolscolorspacecpp11data.tablediagramdigestdoParalleldplyre1071fansifarverforeachformatRfutile.loggerfutile.optionsfuturefuture.applygenericsggplot2globalsgluegowergtablehardhatipredisobanditeratorsKernSmoothlabelinglambda.rlatticelavalifecyclelistenvlubridatemagrittrMASSMatrixmgcvModelMetricsmunsellnlmennetnumDerivparallellypillarpkgconfigplyrpROCprodlimprogressrproxypurrrR6RColorBrewerRcpprecipesreshape2rlangrpartscalesshapeSQUAREMstringistringrsurvivaltibbletidyrtidyselecttimechangetimeDatetzdbutf8vctrsviridisLitewithr

Introduction to cytominer

Rendered fromcytominer-pipeline.Rmdusingknitr::rmarkdownon Oct 14 2024.

Last update: 2020-03-24
Started: 2017-09-07